PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 204aa    MW: 23196.8 Da    PI: 8.3674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012874.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32129187159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Aco012874.1 129 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHTHS 187
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33114187IPR003657WRKY domain
SuperFamilySSF1182901.12E-28121187IPR003657WRKY domain
PROSITE profilePS5081128.851124186IPR003657WRKY domain
SMARTSM007743.7E-38129188IPR003657WRKY domain
PfamPF031063.2E-25130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEGSDQGVGV PSFYVLEVNP PPLPTQMQEV EFPQPVEHVP THGGRANPSP ISGYSFQNSA  60
DFSISEKPQE VGTSLEPKDG NDQIISSSKD GANSWWKRSA TTEKSKMKVR RKMREPRFCF  120
QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR SYYRCTHTNC RVKKRVERLS EDCRMVITTY  180
EGRHTHSPCD DTNSSEHNCF SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25120186874Probable WRKY transcription factor 4
2lex_A4e-25120186874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919760.12e-89PREDICTED: probable WRKY transcription factor 12 isoform X2
SwissprotQ93WY42e-64WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A061DUM58e-77A0A061DUM5_THECC; WRKY family transcription factor
STRINGGLYMA07G13611.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-65WRKY family protein